{"id":250,"date":"2022-11-25T18:33:14","date_gmt":"2022-11-25T23:33:14","guid":{"rendered":"http:\/\/www.yingfengwang.org\/?page_id=250"},"modified":"2022-11-26T00:03:49","modified_gmt":"2022-11-26T05:03:49","slug":"proteomics","status":"publish","type":"page","link":"https:\/\/www.yingfengwang.org\/?page_id=250","title":{"rendered":"Proteomics"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\">Tandem mass spectrometry (MS\/MS) has been a widely applied in community proteomics (metaproteomics) for identifying peptides and proteins. We develop computational identification tools and apply these tools to solve real-world problems.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Sipros 3 <a rel=\"noreferrer noopener\" href=\"https:\/\/github.com\/ywang802\/Sipros3\" data-type=\"URL\" data-id=\"https:\/\/github.com\/ywang802\/Sipros3\" target=\"_blank\"><strong>Source Code<\/strong><\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong><a href=\"https:\/\/www.yingfengwang.org\/myfiles\/research\/metabolomics\/midas\/v1\/mzML2FT.zip\" data-type=\"URL\" data-id=\"https:\/\/www.yingfengwang.org\/myfiles\/research\/metabolomics\/midas\/v1\/mzML2FT.zip\" target=\"_blank\" rel=\"noreferrer noopener\">Download<\/a><\/strong> the tool for converting mzML format to FT2 format.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Citation<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Nicholas B. Justice, Zhou Li, Yingfeng Wang, Susan E. Spaudling, Annika C. Mosier, Robert L. Hettich, Chongle Pan, and Jillian Banfield, \u201c15N- and 2H Proteomic Stable Isotope Probing Links Nitrogen Flow to Archaeal Heterotrophic Activity,\u201d Environmental Microbiology, vol. 16, no.10, pp. 3224-3237, 2014.<\/li>\n\n\n\n<li>Zhou Li, Yingfeng Wang, Qiuming Yao, Nicholas Justice, Tae-Hyuk Ahn, Dong Xu, Robert Hettich, Jillian Banfield, and Chongle Pan, \u201cDiverse and Divergent Protein Post-translational Modifications in Two Growth Stages of A Natural Microbial Community,\u201d Nature Communications, vol 5, no. 4405, 2014.<\/li>\n\n\n\n<li>Yingfeng Wang, Tae-Hyuk Ahn, Zhou Li, and Chongle Pan, \u201cSipros\/ProRata: A Versatile Informatics system for Quantitative Community Proteomics,\u201d Bioinformatics, vol 29, no 16, pp 2064-2065, 2013.<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Tandem mass spectrometry (MS\/MS) has been a widely applied in community proteomics (metaproteomics) for identifying peptides and proteins. We develop computational identification tools and apply these tools to solve real-world problems. Sipros 3 Source Code Download the tool for converting mzML format to FT2 format. Citation<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":76,"menu_order":2,"comment_status":"closed","ping_status":"closed","template":"","meta":{"nf_dc_page":"","om_disable_all_campaigns":false,"_monsterinsights_skip_tracking":false,"_uf_show_specific_survey":0,"_uf_disable_surveys":false,"_jetpack_hide_featured_image":false,"_jetpack_featured_image_duplicate_dismissed":0,"nfd_onboarding_generated":"","footnotes":""},"class_list":["post-250","page","type-page","status-publish","hentry"],"aioseo_notices":[],"aioseo_head":"\n\t\t<!-- All in One SEO 5.0.5 - aioseo.com -->\n\t<meta name=\"description\" content=\"Tandem mass spectrometry (MS\/MS) has been a widely applied in community proteomics (metaproteomics) for identifying peptides and proteins. We develop computational identification tools and apply these tools to solve real-world problems. Sipros 3 Source Code Download the tool for converting mzML format to FT2 format. Citation Nicholas B. Justice, Zhou Li, Yingfeng Wang, Susan E.\" \/>\n\t<meta name=\"robots\" content=\"max-image-preview:large\" \/>\n\t<link rel=\"canonical\" href=\"https:\/\/www.yingfengwang.org\/?page_id=250\" \/>\n\t\t<meta name=\"generator\" content=\"All in One SEO (AIOSEO) 5.0.5\" \/>\n\t\t<meta property=\"og:locale\" content=\"en_US\" \/>\n\t\t<meta property=\"og:site_name\" content=\"Yingfeng Wang -\" \/>\n\t\t<meta property=\"og:type\" content=\"article\" \/>\n\t\t<meta property=\"og:title\" content=\"Proteomics - Yingfeng Wang\" \/>\n\t\t<meta property=\"og:description\" content=\"Tandem mass spectrometry (MS\/MS) has been a widely applied in community proteomics (metaproteomics) for identifying peptides and proteins. 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Sipros 3 Source Code Download the tool for converting mzML format to FT2 format. Citation Nicholas B. 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